ImportError: No module named 'sklearn.model_selection'
Before doing the embarrassing things I did below, read this:
Setting Jupyter kernel to match Python conda environment
Change to conda environment you need to update (tensorflow_gpu in may case).
List packages that have "scikit" in them.
(tensorflow_gpu) $ conda list | grep scikit
Nothing, nada.
$ conda install scikit-learn
Fetching package metadata .........
Solving package specifications: .
Package plan for installation in environment /Users/ukilucas/anaconda3/envs/tensorflow_gpu:
The following NEW packages will be INSTALLED:
mkl: 2017.0.1-0 numpy: 1.11.3-py35_0 scikit-learn: 0.18.1-np111py35_1 scipy: 0.18.1-np111py35_1
(tensorflow_gpu) $ conda list | grep scikit
scikit-learn 0.18.1 np111py35_1
import sklearn0.18.1
print (sklearn.__version__)
from sklearn.model_selection import train_test_split
You do not have to re-start Jupyter Notebook
that is all!
And here is my very long and embarrassing story:
Check the version of the package
import sklearn
print (sklearn.__version__)
0.17.1
Install the latest package
$ conda install scikit-learn
installs:
scikit-learn-0.18.1
However, already running jupyter notebook does not see the change.
Making sure I am in the right (tensorflow) environment:
Making sure I am in the right (tensorflow) environment:
$ source activate tensorflow
$ conda install scikit-learn
installs:
mkl: 2017.0.1-0
numpy: 1.11.3-py35_0
scikit-learn: 0.18.1-np111py35_1
scipy: 0.18.1-np111py35_1
Still, Jupyter Notebook does not see scikit-learn 0.18.1
Restarting jupyter notebook from the same tensorflow environment
Restarting jupyter notebook from the same tensorflow environment
(tensorflow) uki@Uki ~ $ jupyter notebook ~/dev/
Still, Jupyter Notebook does NOT see scikit-learn 0.18.1
(tensorflow) uki@Uki ~ $ conda update --all
Fetching package metadata .......
Solving package specifications: ..........
# All requested packages already installed.
# packages in environment at /Users/ukilucas/anaconda3/envs/tensorflow:
#
mkl 2017.0.1 0
numpy 1.11.3 py35_0
openssl 1.0.2k 0
pip 9.0.1 py35_1
python 3.5.2 0
readline 6.2 2
scikit-learn 0.18.1 np111py35_1
scipy 0.18.1 np111py35_1
setuptools 27.2.0 py35_0
sqlite 3.13.0 0
tk 8.5.18 0
wheel 0.29.0 py35_0
xz 5.2.2 1
zlib 1.2.8 3
(tensorflow) uki@UkiPEsMcBookPro 192.168.1.77 09:03 ~ $
Jupyter Kernels
Ok, so there is a clear distinction of the conda env (in my case tensorflow) from which I am starting Jupyter Notebook and what the kernels see.
I tried to switch kernels Python [conda root] and Python [default], NO difference: sklearn.__version__ = 0.17.1
(py35) ~ $ conda list
# packages in environment at /Users/ukilucas/anaconda3/envs/py35:
#
cycler 0.10.0 py35_0
freetype 2.5.5 2
icu 54.1 0
libpng 1.6.27 0
matplotlib 2.0.0 np111py35_0
mkl 2017.0.1 0
mock 2.0.0 py35_0
numpy 1.11.3 py35_0
olefile 0.44
openssl 1.0.2k 0
pandas 0.19.2 np111py35_1
pbr 1.10.0 py35_0
Pillow 4.0.0
pip 9.0.1 py35_1
protobuf 3.1.0 py35_0 conda-forge
pyparsing 2.1.4 py35_0
pyqt 5.6.0 py35_2
python 3.5.2 0
python-dateutil 2.6.0 py35_0
pytz 2016.10 py35_0
qt 5.6.2 0
readline 6.2 2
scikit-learn 0.18.1
scikit-learn 0.18.1 np111py35_1
scipy 0.18.1 np111py35_1
seaborn 0.7.1 py35_0
setuptools 27.2.0 py35_0
sip 4.18 py35_0
six 1.10.0 py35_0
sklearn 0.0
sqlite 3.13.0 0
tensorflow 0.12.1 py35_1 conda-forge
tk 8.5.18 0
wheel 0.29.0 py35_0
xz 5.2.2 1
zlib 1.2.8 3
(py35) ~ $ jupyter notebook ~/dev/
NO difference: sklearn.__version__ = 0.17.1
Jupyter Notebook does NOT see scikit-learn 0.18.1
Jupyter Notebook does NOT see scikit-learn 0.18.1
Removing Old Packages
$ conda listscikit-learn 0.18.1
sklearn 0.0
(py35) ~ $ conda remove scikit-learn
(py35) ~ $ pip uninstall scikit-learn
(py35) ~ $ pip uninstall sklearn
(py35) ~ $ conda install scikit-learn
(py35) ~ $ jupyter notebook ~/dev/
Did not help!
import sys
sys.executable
Did not HELP!!
Check which Python Executable is being used
import sys
sys.executable
'/Users/ukilucas/anaconda3/bin/python'
$ conda list# packages in environment at /Users/ukilucas/anaconda3/envs/py35:
Deleting Old and Reinstalling Jupyter Notebook
from jupyter_core.paths import jupyter_data_dirprint(jupyter_data_dir())
/Users/ukilucas/Library/Jupyter
Deleting :
- /Users/ukilucas/Library/Jupyter
- ~/.ipython
- ~/.jupyter
(py35) ~ $ jupyter --version
4.2.0
(py35) ~ $ jupyter notebook --generate-config
Writing default config to: /Users/ukilucas/.jupyter/jupyter_notebook_config.py
(py35) dev $ jupyter notebook
[I 09:52:59.160 NotebookApp] [nb_conda_kernels] enabled, 2 kernels found
Did not HELP!!
Removing Anaconda3 and Jupyter - fresh installs
$ rm -r ~/Library/Jupyter
$ rm -r ~/.ipython
$ rm -r ~/.jupyter
$ rm -r ~/anaconda3/
Installation (Mac OSX)
Downloads $ wget https://repo.continuum.io/archive/Anaconda3-4.3.0-MacOSX-x86_64.sh
Note the new Python is 3.6, but for TensorFlow I will need 3.5
bash Anaconda3-4.3.0-MacOSX-x86_64.sh
Anaconda3 will now be installed into this location:
/Users/ukilucas/anaconda3
Refresh Bash Terminal
$ source ~/.bash_profile
conda info --envs
Refresh Bash Terminal
$ source ~/.bash_profile
conda info --envs
root * /Users/ukilucas/anaconda3
conda list
...
python 3.6.0
...
Create a new enviroment for Python 3.5
TensorFlow Installation instructions# Python 3.5
$ conda create -n tensorflow python=3.5At this time GPU Mac version is available only via pip
# Mac OS X, GPU enabled, Python 3.4 or 3.5:
(tensorflow)$ export TF_BINARY_URL=https://storage.googleapis.com/tensorflow/mac/gpu/tensorflow_gpu-0.12.1-py3-none-any.whl
$ sudo pip3 install --ignore-installed --upgrade $TF_BINARY_URL
Summary
Full delete of Anaconda3 and Jupyter and fresh re-installation fixed the problem.
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